Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LNIMIALIPALLWGTVPLIITKFGGSTRQQTMGMTLGALTFAVIVFFFTDPVYTLKTVGISFITGCLWTVGQMFQLQAFKIIGVSKAMPISTGMQLVGTTLCGVILFHEWDTTLRIILGFIALALIVGGIFLTSYAEKEEDGTNALKQ----GLITLFIS-------ACGYVGLVVLIQGFKI-------DGINAILPQAIGMVISAL--------IMTHSGGTEKRFNKRTLLLTIPGVIWAAGNVAMVHANQLVGVATGFSL--SQLGVVISTIGGIILLKEKKTQKEMLFVIVGVVLVVLGG-ILIGVAKGA |
| 1SUU Chain:A ((506-809)) | ENIVVMLTKK---GFLKRLSQNEYKLQGTGGKGLSSFDLND-------GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDQNISELINLGD---QEEILTIKNSKDLTDDAYLLLTT------ASGKIARFESTDFKAGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRG---ATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKFI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SUU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -249675 for 2193 contacts (-113.9/contact) +
2D Compatibility (PS) -28151 + (NN) 218 + (LL) 3724
1D Compatibility (HY) 0 + (ID) 1800
Total energy: -275684.0 ( -125.71 by residue)
QMean score : 0.209
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