Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITFDQLDTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVKLIESNNSDLIYLGLLAINPNKITTEQIEKWNIAFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEA-------ETLLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK----------
1T06 Chain:A ((1-235))
-MDFKTVMQELEALGKERTKKIYISNGAHE--PVFGVATGAMKPIAK--KIKLNQELAEELYATGNYDAMYFAGIIADPKAMSESDFDRWIDGAY-FYMLSDYVVAVTLSESNIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKEVGIVEVKRDNKKSSLLNASESIQKELDRGRLGFKRKYVRC
General information:
TITO was launched using:
RESULT:
Template:
1T06.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93477 for 1756 contacts (-53.2/contact) +
2D Compatibility (PS) -23413 + (NN) -11977 + (LL) 664
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -141803.0 ( -80.75 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1T06.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T06-query.scw
PDB file :
Tito_Scwrl_1T06.pdb
: