Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIAKFFRNVSSEMHKVTWPTRKELLTYTVTVVITVVLFALFFMLIDFGIEQIIKLIV
1RH5 Chain:B ((11-59))
---LKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPAT-------
General information:
TITO was launched using:
RESULT:
Template:
1RH5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12470 for 194 contacts (-64.3/contact) +
2D Compatibility (PS) -5032 + (NN) -3304 + (LL) 1488
1D Compatibility (HY) -4800 + (ID) 350
Total energy: -24468.0 ( -126.12 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_1RH5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RH5-query.scw
PDB file :
Tito_Scwrl_1RH5.pdb
: