Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAKKVIKEVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVVITVFEDRSFTFITKTPPAAVLLKKAAKVEKGSGEPNKTKVASVTRAQVQEIAETKMPDLNAANVESAMLMVEGTARSMGITIQD
3CJQ Chain:E ((1-137))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVAAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIR-------------------ITWEQVLEIAKQKMP------LEAAARMIAGSARSMGVEV--
General information:
TITO was launched using:
RESULT:
Template:
3CJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73264 for 747 contacts (-98.1/contact) +
2D Compatibility (PS) -11836 + (NN) -3611 + (LL) 1384
1D Compatibility (HY) -11600 + (ID) 3450
Total energy: -102377.0 ( -137.05 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_3CJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJQ-query.scw
PDB file :
Tito_Scwrl_3CJQ.pdb
: