Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VFIHGFQEEVGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEKVIEKSVEQAGTAELAAEMREVQVRLQQSELLMREQFYPRVGLTERDFSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYADIGKMYEGAR--SSEPFYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV
1UDD Chain:A ((4-215))
MITDKLRRDSEQIWKKIFEHPFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSKAEYPL-MAELIELARDEVTVEVENYVKLLKELDLTLEDAIKTEPTLVNSAYMDFMLATAYKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKIYREWGKVYLSNEYLNLVGRLRKIIDSSG----HSGYDRLRRIFITGSKFELAFWEMAWRGG---------
General information:
TITO was launched using:
RESULT:
Template:
1UDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120290 for 1647 contacts (-73.0/contact) +
2D Compatibility (PS) -22638 + (NN) -10265 + (LL) 796
1D Compatibility (HY) -13200 + (ID) 2350
Total energy: -167947.0 ( -101.97 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_1UDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDD-query.scw
PDB file :
Tito_Scwrl_1UDD.pdb
: