Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTIKKYEPLNLYTNFKKSAERYPEMPIHFDEELVTFPELGLHSTYKKCEEAIIQKAAHLHKFGVRKEEKVIVYKSAKFDSYILAVAISYIGAVPIMVSPHLPASTIDIFVNRLDQPWLLFDSETSDKSH-----QLNNLPDSRL--INAE---QLFK-APLDGYTCEQEELPKDMIAYMTHTSGTTGVPKLIAHSANSMGWRTKYQRRILNFIKPRGLVAFHISPVHSRFNI--GVSSLMSLGFPLLPIANPSKANVEKVLREYKPYVLETHPNHFVQWASLAREKPDVFQSIKFYHSTFDAINKETMAVFLRTSEYKKPLFLQIYGQSECGPMILRGHTLQSIETLNARDMGIGVPGLTEVRIVDQDGNPVPAGVSGNIQMLSKGRALTYYKEEARFEENVY-GPWWDSGDYGMKDEKGRLFLQDRQVDLVETIDS---TLAIEDKLLDTLTFLDEVVIIRGEN--GSPQPII--AVHNDGEMNWDAWWKAV-S-DLPHMNEP-MVMKYDEIPRTATMKVQRLQMERELKK |
| 1MDB Chain:A ((25-530)) | --------ETFGDLLRDRAAKYGDRIAITC--------GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV---FGCTLQQVFGMAEGLVNYTRLDDPE--E-IIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA-HPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAIS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -234949 for 4169 contacts (-56.4/contact) +
2D Compatibility (PS) -51951 + (NN) -23298 + (LL) 1632
1D Compatibility (HY) -12400 + (ID) 3800
Total energy: -324766.0 ( -77.90 by residue)
QMean score : 0.453
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