Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEQDLQNRLVDQEILHGSDLLDEIHEVKQNNEQLIIELNTKYHTKKEVTKYLSDITGKPVDPSVDVSLPFYSDFGKHITFGKNIFINLNVTFVDLGGITIEDNVLIGPGARLVTVNHLVSPKKRRG--LRVAPICVKKNAWIGANTTILSGVTIGENAIVAADATVTKDVPPNVIVAGSPAKQIRKIIEE
1KRV Chain:C ((16-185))
------------------TDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREI---
General information:
TITO was launched using:
RESULT:
Template:
1KRV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92940 for 1272 contacts (-73.1/contact) +
2D Compatibility (PS) -18446 + (NN) -7210 + (LL) 2056
1D Compatibility (HY) -11200 + (ID) 3000
Total energy: -130740.0 ( -102.78 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1KRV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KRV-query.scw
PDB file :
Tito_Scwrl_1KRV.pdb
: