Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKGLKKMKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQTGKAN-PILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQKIELEMDEIKLDSIIHDISVLESKDRPQNNEFITKFL
2LNB Chain:A ((21-78))
---------------EQRILQVLTEA--GSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT--SPATWCLGGTD-------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46227 for 365 contacts (-126.6/contact) +
2D Compatibility (PS) -5901 + (NN) -2358 + (LL) 7100
1D Compatibility (HY) -3200 + (ID) 250
Total energy: -50836.0 ( -139.28 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_2LNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LNB-query.scw
PDB file :
Tito_Scwrl_2LNB.pdb
: