Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALIEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEI-GTKKSL---DWVIEDR---EEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDG---NALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYN----PQQPLVDGSYHFPGFEKK |
| 4U0O Chain:B ((8-288)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------PSWLRISTVQRLVRQYGIHTICEEGRCPNRGECYGQKTATFLLLG------PTCTRAC----AFCQV---EKGHAPAAVDPEEPTKIAAAVATLGLRYVVLTSVARDDLPDQGAGQFVATMAAIRQRCPGTEIEVLSPDFRMDRGRLSQRDCIAQIVAAQPACYN-HNLETVRRLQGPVRRGATYESSLRVLATVKELNPDIPTKSGLMLGLGETEAEIIETLKDLRRVGCDRLTLGQYL----------PPSLSHLPVVKYWTPEEFNTLGNIARELGFSHVRSGPLVRSSYHAAE---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U0O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 75648 for 2123 contacts (35.6/contact) +
2D Compatibility (PS) -27317 + (NN) -11271 + (LL) 10448
1D Compatibility (HY) -800 + (ID) 2650
Total energy: 44058.0 ( 20.75 by residue)
QMean score : 0.197
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