Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKEMLNFDYYNPTHIIFGKNRFNELNEVIPQ-DK-KVLILYGGGSVERFGTLDKVKAA--LKSREVGEFGGIEANPTYETLIKAIQLVKEENYDFLLAVGGGSVIDGTKFVAAGALFDGEPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFVEKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMTYPVGALLQDRYAESLLQTLIEIGPDVIKEDNHDYNTRATFMWSATNALNGTLSRGVPQDWASHSLGHEITALYGIDHARTLAIVLPSLLNVRRSEKHDKLVQYAERVWGITSGS-DEEKIDAAILKTREFFESLGAGTRFSDYGLGEEVVDLLVDQLDRHGLTNISERGDQTLEVSRQIYTNAL |
| 3OX4 Chain:A ((2-383)) | -----ASSTFYIPFVNEMGEGSLEKAIKDLNGSGFKNALIVSDAFM-NKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGID---K-SKKPALPLMSINTTAGTASEMTRFCIITDEVRHVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGMDALTHAFEAYSSTA-ATPITDACALKAASMIAKNLKTACDNGK-DMPAREAMAYAQFLAGMAFN---NASLGYVHAMAHQLGGYYNLPHGVCNAVLLPHVLAYNASVVAGRLKDVGVAMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLTELGAKKEDVPLLADHALKDA-CALTNPRQGDQKEVEELFLSAF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OX4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173391 for 3583 contacts (-48.4/contact) +
2D Compatibility (PS) -40440 + (NN) -15837 + (LL) 1444
1D Compatibility (HY) -7200 + (ID) 4100
Total energy: -239524.0 ( -66.85 by residue)
QMean score : 0.425
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