Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --------------------------------------------------------------------------------------MGNWQQKWESWRDMTAAMQQEIKIEAAEKVTSYIKNDQFEEAINVIRQTENLLNELDFET-KMNRVEEQLQA------FTSDQEAAKSFEASQLQNIEKP------STKVSF----DLSHVKSEAINQFTKRDFNLVDSNDTHMQFLKGNRNFYMDIFNPEESEEYHYANLDEKCQYKNIGFICQNDAAAEIATKLTNEWLETLEAPKKKFLTVNIANLNAMKQNPEVLFQ------------------------------------------------------------------------------------------ |
2A9F Chain:A ((3-388)) | LKNQLGQLALEQAKTFGGKLEVQPKVDIKTKHDLSIAYTPGVASVSSAIAKDKTLAYDLTTKKNTVAVISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAG-------VDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGI---INEQEAAQLAPDIAKVTNREFKSGTLEDALEGADIFIGVSA------PGVLKAEWISKMA---ARPVIFAMAN-----PIPEIYPDEALEAGAYIVGTGRSDFPNQINNVLAFPGIFRGALDARAKTITVEMQIAAAKGIASLVPDDALSTTNIIPDAFKEGVAEIVAKSVRSVVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2A9F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 35908 for 1289 contacts (27.9/contact) +
2D Compatibility (PS) -20010 + (NN) -2627 + (LL) 2580
1D Compatibility (HY) -8800 + (ID) 1300
Total energy: 5751.0 ( 4.46 by residue)
QMean score : 0.262
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