Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEGEIPEKYRSVDEEEINRS--FGGSLPAVHAVVKSYLQIIWVTKWTE-------
1YSM Chain:A ((1-55))
-MASVLEELQKDLEEVKVLLEKSTRKRLRDTLTSEKSKIETELKNKMQQKSQKKPE
General information:
TITO was launched using:
RESULT:
Template:
1YSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6859 for 225 contacts (30.5/contact) +
2D Compatibility (PS) -4827 + (NN) 761 + (LL) 208
1D Compatibility (HY) 400 + (ID) 300
Total energy: 3101.0 ( 13.78 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_1YSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSM-query.scw
PDB file :
Tito_Scwrl_1YSM.pdb
: