Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSFQALFIEKEADNTSLHFRETTIDNLPENEVTIEVHYSGINYKDGLAVLPDGKIVSEYPFIPGIDASGVVVNSKSDQFQVGDEVIVTSYDFGVSYFGGYSEFIRVPAEWVVPLPDGLSLKEAMILGTAGFTAALSVDALEFSGVTP-NAGKIAVSGATGGVGSLSSAILSKRGFSVVASSGKSDAKEFLEKFGVSEIVSREAFQPEKVRALDKQLYAGAIDCVGGKPLSYLLTAVQYGGAVTTCGMSAGGKLDTTVFPFILRGIQLFGIDSVLCP----MSKRERIWNRLA-TDYKLTNLESLATEIAFSELPESLHQVMNGGVTGRYLVKVK |
| 3NX4 Chain:A ((1-324)) | ---MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASEDPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQD-GEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAES--RPLEKQLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFY---AQ--AATEITLADAPKFADAIINNQVQGRTLVKIK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NX4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209644 for 2970 contacts (-70.6/contact) +
2D Compatibility (PS) -34058 + (NN) -14515 + (LL) 1012
1D Compatibility (HY) -26800 + (ID) 7050
Total energy: -291055.0 ( -98.00 by residue)
QMean score : 0.624
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