Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEKVLWGYDEKTGPEMWGHICSDFEIAHTGKAQSPVDIE-QADVVKLKPSTMKFYYKETDYTIRRIEQSVHV-FPHDKEQGLRFNGEYYPLVSFHAHIPAEHLLDGYIYPIEWHFVHEKPDGTTLVMSAWMDIDNTNNIEFKNLPTYFPEVFADFETEREITLDVNEFMPEERVFYTYQGSRTTPPTVEGVTWIVLKNAKTLGQEDFTEFEKAIGNTSRPVQDLNGREITFYN
4XZ5 Chain:D ((4-224))
-------WGYFGEEGPQYWGELAPEFSTCKTGKNQSPINLKPQTAVGTTSLPGFDVYYRETALKLINNGHTLQVNIPLGSY--IKINGHRYELLQYHFHTPSEHQRDGFNYPMEMHLVHKDGDGNLAVIAILFQ-EGEENETLAKLMSFLPQTLKKQEIHESVKIHPAKFFPADKKFYKYSGSLTTPPCSEGVYWMVFKQPIQASVTQLEKMHEYLGSNARPVQRQNARTL----
General information:
TITO was launched using:
RESULT:
Template:
4XZ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72958 for 1683 contacts (-43.3/contact) +
2D Compatibility (PS) -23318 + (NN) -7014 + (LL) 1208
1D Compatibility (HY) -14800 + (ID) 3500
Total energy: -120382.0 ( -71.53 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_4XZ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XZ5-query.scw
PDB file :
Tito_Scwrl_4XZ5.pdb
: