Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKI-RSHSVQQACLSGGEGCLSVDREVPGY---VVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
4DR9 Chain:C ((25-165))
----------GDRVLRQPAKRVSR-IDDELRQTIRQMLQTMYSAD------------GIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQC---QEGCLSI----PGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRV----------------
General information:
TITO was launched using:
RESULT:
Template:
4DR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75409 for 1003 contacts (-75.2/contact) +
2D Compatibility (PS) -14585 + (NN) -4050 + (LL) 1732
1D Compatibility (HY) -10800 + (ID) 2850
Total energy: -105962.0 ( -105.65 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_4DR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR9-query.scw
PDB file :
Tito_Scwrl_4DR9.pdb
: