Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHE-AGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPT---DKLILSDKDTKHPRLKDAENNFVWENK
2IXC Chain:C ((1-183))
MKARELDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVS-SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAAPSLSDRDAAAPSFEDVRAS------
General information:
TITO was launched using:
RESULT:
Template:
2IXC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62537 for 1404 contacts (-44.5/contact) +
2D Compatibility (PS) -19088 + (NN) -5140 + (LL) 760
1D Compatibility (HY) -14400 + (ID) 3150
Total energy: -103555.0 ( -73.76 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2IXC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IXC-query.scw
PDB file :
Tito_Scwrl_2IXC.pdb
: