Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVITYGTFDLLHWGHIHLLKRAKAL--GDYLIVAISSDE-------FNRIKHKEAYHSYEHRKLIIEAIRYVDEVIPENNWEQKRDDIEKYGIDVFVMGDD----WEGEFDFLKDVCEV-VYLP--RTEGISTSQIKDELK
4MVD Chain:G ((98-229))
--RVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQH-------CRYVDEVVRNAPWTLTPEFLAEHRID-FVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDI-----
General information:
TITO was launched using:
RESULT:
Template:
4MVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70744 for 793 contacts (-89.2/contact) +
2D Compatibility (PS) -11960 + (NN) -1294 + (LL) 1792
1D Compatibility (HY) -8800 + (ID) 2500
Total energy: -93506.0 ( -117.91 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_4MVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVD-query.scw
PDB file :
Tito_Scwrl_4MVD.pdb
: