Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LSQMSILEKIKD--AGVVGCGGAGFPTHAKFSGE--VEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKS--------QVGAEFAVIATKRYYTEEIAALRSAITELDASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGI--------------PLMVGCIVSNVSTMWNVFHAIQDDAPVVRKQLTVTGAVGEPKL-LDVPVGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDQSTIADKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLC-PRQQLGHDIHPHKVMRHFAVAEDITDIKPDP------IWEEAMICCECGICEVIACPMGLSPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAPKN--ILIKMGLQQYADVHLEKMHYLEVDEVFIPTKMHIGAPSIPVVSEGD-IVKKGDLIAKIPDTALGANIHASIDGQIIRITEEQVHIKKVMS------------------- |
1Y8Q Chain:B ((6-550)) | GLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWETKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y8Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108366 for 3501 contacts (-31.0/contact) +
2D Compatibility (PS) -47300 + (NN) 4886 + (LL) 0
1D Compatibility (HY) 2400 + (ID) 2500
Total energy: -150880.0 ( -43.10 by residue)
QMean score : 0.129
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