Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDIL-YKKTQAVE------------YFQEMIDTPGEFVQHRQLYSALTVTAADASVIAILQSVTEKKQTFS-PMFAS----------IFAKPVIGIVTKVDLAESDKDIERAERELRMAGAKHIFYISSVEETGIEELRAYLED
1WMS Chain:A ((8-169))
-FKVILLGDGGVGKSSLMNRYVTNKFDT---TIGVEFLNKDLEVDGHFVTMQIWDTAGQ----ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV-
General information:
TITO was launched using:
RESULT:
Template:
1WMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42434 for 1005 contacts (-42.2/contact) +
2D Compatibility (PS) -14398 + (NN) -2421 + (LL) 808
1D Compatibility (HY) -2800 + (ID) 1350
Total energy: -62595.0 ( -62.28 by residue)
QMean score : 0.249
(partial model without unconserved sides chains):
PDB file :
Tito_1WMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WMS-query.scw
PDB file :
Tito_Scwrl_1WMS.pdb
: