Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNCEI-PNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
2OXM Chain:A ((4-221))
---FGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK----
General information:
TITO was launched using:
RESULT:
Template:
2OXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88558 for 1790 contacts (-49.5/contact) +
2D Compatibility (PS) -23015 + (NN) -9751 + (LL) 716
1D Compatibility (HY) -19200 + (ID) 5600
Total energy: -145408.0 ( -81.23 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2OXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OXM-query.scw
PDB file :
Tito_Scwrl_2OXM.pdb
: