Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKVTARIKGE
1OYP Chain:D ((1-241))
MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSML-----------------SGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLGDSL-------
General information:
TITO was launched using:
RESULT:
Template:
1OYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142050 for 1925 contacts (-73.8/contact) +
2D Compatibility (PS) -24210 + (NN) -8778 + (LL) 1144
1D Compatibility (HY) -25200 + (ID) 7850
Total energy: -206944.0 ( -107.50 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1OYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OYP-query.scw
PDB file :
Tito_Scwrl_1OYP.pdb
: