Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNPTKEEIQHILKKAKVIAVVGLSDKPDRTSYRVSQIMQQAGYKIIPVNPNADEILGEKTVKHLTDIEEHVDIVNVFRRSEFLPEIAEAFDQIDADVFWAQLGIANQEAFDFLTEKGYPTVMDYCIKVAYQEMD
1Y81 Chain:A ((14-129))
---------------FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSFGRCIMVET----
General information:
TITO was launched using:
RESULT:
Template:
1Y81.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99099 for 913 contacts (-108.5/contact) +
2D Compatibility (PS) -12816 + (NN) -3786 + (LL) 1664
1D Compatibility (HY) -5600 + (ID) 1500
Total energy: -121137.0 ( -132.68 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1Y81.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y81-query.scw
PDB file :
Tito_Scwrl_1Y81.pdb
: