Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYDGT--TLVITITDK-TRKITCEIPKDKVAKARLAIQF
1Y96 Chain:A ((6-69))
-------------------------------------------------------------------------------------KKGPLEWQDYIYKEVRVTASE----KNEYKGWVLTTDPVSANIVLVNFLEDGSMSVTGIMGHAVQTVE-----
General information:
TITO was launched using:
RESULT:
Template:
1Y96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23500 for 363 contacts (-64.7/contact) +
2D Compatibility (PS) -6703 + (NN) -3405 + (LL) 6580
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -29178.0 ( -80.38 by residue)
QMean score : 0.711
(partial model without unconserved sides chains):
PDB file :
Tito_1Y96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y96-query.scw
PDB file :
Tito_Scwrl_1Y96.pdb
: