Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VDFVIEMLGIRKEFSGFVANDNITLQLKQGEIHALLGENGAGKSTLMNVLFGLYEPDGGEIRVRGT--KENINSPNKANELGIGMVHQHFMLVDKFTVAENIILGKEPSKLGVIEKKKAIEEIKEISDRYGLRVDPNAIVRDISIGMQQRVEILKTLYRGADILIFDEPTAVLTPQEIKELIQIMRSLIKEGKSIILITHKLKEIMDVCDRVTVIRRGKGMGTVNVPETTPQDLANLMVGREVVFTTEKIDANPGKDVLEVKDLVVKESRGVESVRGLNLTVRAGEIVGIAGVDGNGQSELISAIAGLSKVTSGSILLNGEHIENKKPRKITEAGLGHIPEDRHKHGLVLEMSLGENIALQTYYKKPISSKGFLNHKAMYDFARELIEEYDVRASSEYVAAKSLSGGNQQKAIIAREIHRNPDFLIAAQPTRGLDVGAIEFIHRRLIEQRDNGKAVLLMSFELDEIMNVSDRIAVIYEGKIVAIVDPKETTEQELGLMMAGSSKQEAEMGEKEHV |
2OLK Chain:D ((24-246)) | ---MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE-EVGMVFQRFNLFPHMTVLNNITLA--PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMD-----GGYIIEEGKPEDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2OLK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122891 for 1803 contacts (-68.2/contact) +
2D Compatibility (PS) -24035 + (NN) -10449 + (LL) 20428
1D Compatibility (HY) -16400 + (ID) 3700
Total energy: -157047.0 ( -87.10 by residue)
QMean score : 0.421
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