Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKPIVVGVTGGSGSGKTSVTKAICN----HFSGHSILMIAQDVYYHDQANISFEDRLK--VNYDHPLAFDTDLLISHIAALRRYESIEKPIYDYAKYTRKKEVEIQEPREVIILEGILILEDKRLRDLMDIKVYVDTDDDIRFIRRLLRDMKERGRTMDSVIEQYLSVVKPMHNEFIEPTKKFADIIIPEGGENHVAIDLMTTKIESILQKHV
1UDW Chain:B ((21-231))
---EPFLIGVSGGTASGKSSVCAKIVQLLGQ-YRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDIL----
General information:
TITO was launched using:
RESULT:
Template:
1UDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99068 for 1557 contacts (-63.6/contact) +
2D Compatibility (PS) -21384 + (NN) -6152 + (LL) 788
1D Compatibility (HY) -21200 + (ID) 4000
Total energy: -151016.0 ( -96.99 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_1UDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDW-query.scw
PDB file :
Tito_Scwrl_1UDW.pdb
: