Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRL-EGTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPK-LAKEADLTSDAYIKLALQLMTK
2ZTC Chain:D ((21-210))
----VRGEVLEVALDHVVIEAAGVGYRV-NATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV---------------HAV--RSPVVE----ALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK
General information:
TITO was launched using:
RESULT:
Template:
2ZTC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111123 for 1248 contacts (-89.0/contact) +
2D Compatibility (PS) -19085 + (NN) -7656 + (LL) 2456
1D Compatibility (HY) -10800 + (ID) 3100
Total energy: -149308.0 ( -119.64 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTC-query.scw
PDB file :
Tito_Scwrl_2ZTC.pdb
: