Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIMLVCSAGM-STSLLVKKMTEAIEKQQVDATVIAVAEADFDKYKGNVDVVLLAPQVRFLEKNLKRVLDPLGIPVAIINGIDYGT-MDGEKVLNDALAMIEK
1TVM Chain:A ((21-113))
KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSF---------GDIPLVHGM--PFVSGVGIEALQNKILTILQG
General information:
TITO was launched using:
RESULT:
Template:
1TVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74239 for 578 contacts (-128.4/contact) +
2D Compatibility (PS) -9826 + (NN) -5193 + (LL) 508
1D Compatibility (HY) -6400 + (ID) 600
Total energy: -95750.0 ( -165.66 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1TVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TVM-query.scw
PDB file :
Tito_Scwrl_1TVM.pdb
: