Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLLVVGSGGREHAIS-KKLLASNNVEKVFC-APGNDGMRLDDIQLVAISETDKAGLIDFAKKAEIAFVIVGPEVPLLEGVVDALEEAGIKAFGPKANAALIEGSKDFAKQFMEKYAIPTAASRTFTDYAEAKAYLNERGVPIVIKADGLAAGKGVTVALEMEEAVLALKDMMLEEKFGDASLKVVIEDFLAGEEFSLMAFVNGEEVYPMSIAQDHKRAYEGDKGPNTGGMGAYSPVPHISEAVIEEAVQ-KILLPTAKGMVKEGRYFRGILYAGLILTADGPKVIEFNARFGDPETQVVLPRLESDFAALIDALLHNEKPDVR--FKKTGLTLGVVLASAGYPEHYEKGNKLTGLND-I---AEDVAIYHAGTKQDENGDFISDGGRVLLLAKEAETMSDARTLLYPEMQKLDNPNFFYRIDIGTKAE |
| 2IP4 Chain:A ((1-411)) | MKVLVVGSGGREHALLWKAAQSPR--VKRLYAAPGNAGMEALA-E-LVPWNGDVEALADWALAEGIDLTLVGPEAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNR----AEGGEVVVEEYLEGEEATVLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPM-DEATLRRV-EEEILGPLVRGLRAEGVVYRGVVYAGLMLTREGPKVLEFNARFGDPEAQALLPLLENDLVELALRVAEGRLAGTRLSWKEG-AAACVVLAAP---GYPE--SPRKGIPLHVPEPPEGVLVFHAGTR-REGGRLVSAGGRVLNVVGLGRDLKEALERAYAYIPQVGFPGAVYRRDIGRRA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175494 for 3585 contacts (-49.0/contact) +
2D Compatibility (PS) -44333 + (NN) -27756 + (LL) 740
1D Compatibility (HY) -27600 + (ID) 8900
Total energy: -283343.0 ( -79.04 by residue)
QMean score : 0.493
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