Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGIMNSLLKQKEMVVKDWLTYYVSVDDPYIFTLKNDHRLMDETGFVLENLFIGMTEDLGKMNAFARELGKAQFITSLGISRILFHIRLLEEFLLDYASEIKTKSANYRELYLFSIKLHQVFSSFTQNLIEGYTHANEQMIVQKENQIIKESTKLIWIAENVFLLPLIGKITDERAKQITETALFEVCEQPVNYLIIDLSGVQLESPNI--GKYIEYFFSSLKLVGVTPIITGMQPQTAKVMVQANLTEQHGIKTFATLRQATKTLMKEKEARNAHK |
3VIV Chain:A ((5-70)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------LAKNIVYVAQIKGQITSYTYDQFDRYITI-AEQDNAEAIIIELD------TPGGRADAMMNIVQRIQQSKIPV------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VIV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -43175 for 391 contacts (-110.4/contact) +
2D Compatibility (PS) -6833 + (NN) -1164 + (LL) 18412
1D Compatibility (HY) -1600 + (ID) 400
Total energy: -34760.0 ( -88.90 by residue)
QMean score : 0.342
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