Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKDYNPEVLENLDKASQEFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRIYTPQEDGPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTGARVVTVDYRLAPENPFPAAVEDAYAALLWVQNHRTSLRAKSSDIIVAGDSVGGNLATVVTQIAKSKGKPNITAQILLYPATDIFSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYI---ANASDRKYDPLVAPIRSKDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNSEATDETYELISEFLEEK |
| 3AIK Chain:C ((61-297)) | ---------------------------------------------------------------------------------EVGKIEDITIPGSETNIKARVYYPKTQGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKWVYNNSEKFNGKYG-IAVGGDSAGGNLAA-VTAILSKKENIKLKYQVLIYPAVSF-----DLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILA-----DLNDLPPALIITAEHDPLRDQGEAYANKLLQSGVQVTSVRFNNVIHGFVS-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AIK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127795 for 2096 contacts (-61.0/contact) +
2D Compatibility (PS) -25447 + (NN) -13521 + (LL) 8356
1D Compatibility (HY) -21200 + (ID) 5350
Total energy: -184957.0 ( -88.24 by residue)
QMean score : 0.569
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