Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIV--ACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSLEQ-----HIKTSDVYVAITKANK-E----FDIPTLNGIAFLTGMGMDEETEKLLNALK
2M1Z Chain:A ((2-103))
KRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRNKERFDGKVVLEVPVSAPIKDAEKVINAALALI-
General information:
TITO was launched using:
RESULT:
Template:
2M1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33691 for 686 contacts (-49.1/contact) +
2D Compatibility (PS) -9971 + (NN) -1061 + (LL) 64
1D Compatibility (HY) 1200 + (ID) 800
Total energy: -44259.0 ( -64.52 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2M1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2M1Z-query.scw
PDB file :
Tito_Scwrl_2M1Z.pdb
: