Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDLFTTIKGQVTGKNVRIVLPEGTDERIVGAAARLQKENIVKPILLGNKAEIEAKAKEIGVSVEGIAIHEPATDPLFDELVAAFVERRKGKA-TEEAARKMLVDPNYFGTMLVYTGKAEGLVSGAAHSTGDTVRPALQIIKTKPGVSKVAGAMIMVRGEERY------LFSDVAINIAPVAADLAENAIVSAETAEIFGID-PRVAMLSFSTKGSAKSDETEKVVEATALAKEKAPELTLDGEFQFDAAFVPTVAEKKAPGSVIKGDANVFIFPSLEAGNIGYKIAQRLGNFEAVGPILQGLNAPVNDLSRGCNTDDVYNLTLITAAQAVNK |
| 2AF3 Chain:D ((16-328)) | ---------------NKTIALPETEDIRTLQAAAKILERGIADIVLVGNEADIKALAGDLDLSKAKIV--DPKTYEKKDEYINAFYELRKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAVQIVKTAKGAALASAFFIISVPDCEYGSDGTFLFADSGMVEMPSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLAKAEAYGPITQGLAKPINDLSRGCSDEDIVGAVAITCVQA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AF3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114589 for 2652 contacts (-43.2/contact) +
2D Compatibility (PS) -32809 + (NN) -14112 + (LL) 1292
1D Compatibility (HY) -19600 + (ID) 7400
Total energy: -187218.0 ( -70.60 by residue)
QMean score : 0.439
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