Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVFITTGTEHYLRQLMANYTGGNVTLLQNFSQSLLYQESTGEKLFQEGAEYRVLQSSGSIKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQSTKLTKAMNM-NKFLIISFWDSEVFFH-DWKKSPLSKEITNIMRKNNTQSGFSHEDIYHYPEFSHDAK
3GZ7 Chain:A ((18-101))
---------------------------------------------------------------QGMIQEIASILVQPGREADFEAGVAQARPLFMRARGCHGVALHRSIEAPQRYTLVVDWETVDNHMVDFRQSADFQEWRKLVGEC----------------------
General information:
TITO was launched using:
RESULT:
Template:
3GZ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37862 for 529 contacts (-71.6/contact) +
2D Compatibility (PS) -8907 + (NN) -3472 + (LL) 5216
1D Compatibility (HY) -800 + (ID) 500
Total energy: -46325.0 ( -87.57 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_3GZ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GZ7-query.scw
PDB file :
Tito_Scwrl_3GZ7.pdb
: