Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFILEVGSLADWVSGLATVGALFWAIKLNSNENRKRLTILFRHSFVSKKNGIIISDG-KPKVFIITPVNNSKFSLEINFRQILLVPSLMDRLLFRAEPKKLSNIEALLKQLENKANWQIIKPNLSGEPIMFDYEFIVKQIKKYADGKRFNFAIEIQFIDSTSKIFKHKEKLELRKIKGL
3DUH Chain:C ((1-170))
LRAVPG-GSSPAWTQCQQLSQKLCTLAWSAHNDVPH----------------IQCGDGCDPQGLRD----NSQFCLQRIHQGLIFYEKLLGSDIFTGEPSPVGQLHASLLGLSQLL-----------QPEGHHWETWQRLLLRFKILRSLQ-----AFVAVAARVFAHGAATLS------
General information:
TITO was launched using:
RESULT:
Template:
3DUH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20466 for 977 contacts (-20.9/contact) +
2D Compatibility (PS) -14046 + (NN) -4295 + (LL) 2992
1D Compatibility (HY) -2800 + (ID) 1250
Total energy: -39865.0 ( -40.80 by residue)
QMean score : 0.218
(partial model without unconserved sides chains):
PDB file :
Tito_3DUH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DUH-query.scw
PDB file :
Tito_Scwrl_3DUH.pdb
: