Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRKETIQFGAIIHGVGGTTDGWRHPDINPAASTDLDFYKTRAKIAEQGLFSFVFIADGLFISEKSIPHFLNRFEPITILSALAESTENIGLVGTFSTSFTEPFTLARQLSSLDHISSGRAGWNLVTSPQEGAARNHSKKNLPTHSDRYTIAAEHLKVVRGLWNSWEEDAFTYNKETGEFFNPEKLHHLNHQGEYFQVEGPLNIGRSKQ-GEPVVFQAGASSTGRDFAAQNAEAIFTHSDSLEEAVEFYRDVKSRAEKAGRNADEVRIFPGISPIVADTLEEAEAKYTEFASLIPIENAVTYLARYFDDYDLSQFDLDAPFPDLGDIGKNAFQSTTDRIKKEAKERHLTLRQ-----VATEAATPKTPFIGTKEQVADLIEVWFQNEAADGFII-ASDIPGTFETFVEQVIPLLQSRGLYRNEYPATTLRGNLGLTIPQNKQAVETK |
1NQK Chain:A ((1-359)) | ----MSLNMFWFLPTH---GDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRS-----------CEDAWLVAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVF--LDHSERYEASAEFTQVWRRLLQR---------------------ETVDFNGKHIHVRGAKLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRK---IRFGIRLHVIVRETNDEAWQAAERLISHLDD-ETIAKAQAAFAR----------------------------------DNLEISPNLWAGVGLVRG--GAGTALVGDGPTVAARINEYAA-LGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQP----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NQK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137489 for 2804 contacts (-49.0/contact) +
2D Compatibility (PS) -35622 + (NN) -13438 + (LL) 5120
1D Compatibility (HY) -9200 + (ID) 3450
Total energy: -194079.0 ( -69.22 by residue)
QMean score : 0.371
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