Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKDLLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEKVLD
1HPC Chain:A ((1-125))
SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCE
General information:
TITO was launched using:
RESULT:
Template:
1HPC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48052 for 989 contacts (-48.6/contact) +
2D Compatibility (PS) -13404 + (NN) -2678 + (LL) 0
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -77734.0 ( -78.60 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_1HPC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HPC-query.scw
PDB file :
Tito_Scwrl_1HPC.pdb
: