Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKQVRDLLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
3GP4 Chain:A ((3-118))
LNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEH--TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL----------------------
General information:
TITO was launched using:
RESULT:
Template:
3GP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48336 for 706 contacts (-68.5/contact) +
2D Compatibility (PS) -12546 + (NN) -7339 + (LL) 1676
1D Compatibility (HY) -9200 + (ID) 2500
Total energy: -78245.0 ( -110.83 by residue)
QMean score : 0.692
(partial model without unconserved sides chains):
PDB file :
Tito_3GP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP4-query.scw
PDB file :
Tito_Scwrl_3GP4.pdb
: