Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSPEYMLSHTCLVREPEKFYQFVTENMYYPNAVPNVIHKKMAEIETEKDV-TIITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNCGMTVT----AKDYLKSDIH--TDCGG-VIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLTDYRNKK--ARIFAVNKERISLPYPFEMMESDAVKVFEEI
4TWJ Chain:A ((5-219))
IRKAAEILAKSKHAVVFTGAGISAE------------------PEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELP-YIAKKAGAKMIIVNAE----------------------
General information:
TITO was launched using:
RESULT:
Template:
4TWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108610 for 1427 contacts (-76.1/contact) +
2D Compatibility (PS) -20573 + (NN) -10223 + (LL) 2132
1D Compatibility (HY) -10800 + (ID) 3400
Total energy: -151474.0 ( -106.15 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_4TWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TWJ-query.scw
PDB file :
Tito_Scwrl_4TWJ.pdb
: