Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSPEDFPVSLALLGK--I-QVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVISH-TGEGLFADLEP--------AFQVTRYHSLVIDPTTVPVNLKVTAVTEDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFVRLGRNVK
1GPM Chain:A ((9-221))
RILILDFGSQYTQLVARRVRELGVYCELWAWDV-TEAQIRDFNPSGIILSGGPESTTEENS-PRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYA-QVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVT--AIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVR------
General information:
TITO was launched using:
RESULT:
Template:
1GPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154231 for 1523 contacts (-101.3/contact) +
2D Compatibility (PS) -19133 + (NN) -6411 + (LL) 268
1D Compatibility (HY) -5200 + (ID) 2150
Total energy: -186857.0 ( -122.69 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_1GPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPM-query.scw
PDB file :
Tito_Scwrl_1GPM.pdb
: