Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLDRVTLEDIE-VNLKAEDWREAIQMSARLLLERGAIKESYIDGMIQS-VENNGPYIVIAKHIALAHTRPEFGVIHGGLTFATLADGVAFGSDMFDPVKLIITLAATDSESHL-EVLSELAEVLMDEEKVTRLIEANSSQAFYDELTKEG
3BJV Chain:A ((3-148))
-LAQAFKENHSIRLGLTAKDWKEAVKLSVTPLIESGAVKPEYYNAIIESTESYGPYYI-LMPGMAMPHARPEAGVQRDAFSLVTLTEPVTFTDG--KEVQVLLALAATSSKIHTSVAIPQIIALFELDHSIERLVNCKTPEEVLAMVEES-
General information:
TITO was launched using:
RESULT:
Template:
3BJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108171 for 1111 contacts (-97.4/contact) +
2D Compatibility (PS) -15168 + (NN) -6973 + (LL) 568
1D Compatibility (HY) -12000 + (ID) 1900
Total energy: -143644.0 ( -129.29 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_3BJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BJV-query.scw
PDB file :
Tito_Scwrl_3BJV.pdb
: