Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGNSVMEKIKGGLVVSCQALEDEPLHSAFIMSKMALAAVQGGAVGIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLKEVREICETGVEIVAMDATTRKRPHNEDLKDILSAIRKEFPNTLFMADTASIEDVYYADSLGFDLIGTTLYGYTEETANKNISDD--DFSHL-KEVLKSTK-RPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQEITTRFTNEIQKIQEERGK
1Y0E Chain:A ((2-222))
-------MLPHGLIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPK-ETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSY--TQGQLLYQNDFQFLKD--VLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKRFVQVME--------
General information:
TITO was launched using:
RESULT:
Template:
1Y0E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134170 for 1866 contacts (-71.9/contact) +
2D Compatibility (PS) -23558 + (NN) -11904 + (LL) 1416
1D Compatibility (HY) -21200 + (ID) 5800
Total energy: -195216.0 ( -104.62 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0E-query.scw
PDB file :
Tito_Scwrl_1Y0E.pdb
: