Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMN-LANGKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIPEIP--TVSSDVAYLHVTTNNTIEGTAMFDVPD-SAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSD-FFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV |
2BI3 Chain:B ((2-356)) | -KQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLG--ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLL--VEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQF----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2BI3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -210434 for 2999 contacts (-70.2/contact) +
2D Compatibility (PS) -38711 + (NN) -24983 + (LL) 776
1D Compatibility (HY) -34000 + (ID) 8600
Total energy: -315952.0 ( -105.35 by residue)
QMean score : 0.543
|
|
|