Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKYLKVSRIIKRRPVAKEVADKGRVKVNGVLAK-SSTDLKLNDQVEIRFGNK----LLTVKVLEMKDSTKKEDAIKMYEIINETRIETDEQA
1VIO Chain:A ((3-72))
LRLDKFIAENVGLTRS-QATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGCVCSNDDYPTIYQFFDYPLAGKLH
General information:
TITO was launched using:
RESULT:
Template:
1VIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5328 for 372 contacts (-14.3/contact) +
2D Compatibility (PS) -6625 + (NN) 4068 + (LL) -140
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -10325.0 ( -27.76 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1VIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIO-query.scw
PDB file :
Tito_Scwrl_1VIO.pdb
: