Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTISGM----------HW-----DMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDAY--DYKHDAAIVYA-E--QPFIMIIFTDKSS------YDDITKIADDVYQVLK |
| 1GHP Chain:A ((2-258)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KELNDLEKK--YNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDD-------IVAYSPILEKYV-GKDITLKALIEASMTYSDNTANNKIIKEIGGI--KKVKQRLKEL-GDKVTNPVRYDIELQYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1GHP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -98026 for 1895 contacts (-51.7/contact) +
2D Compatibility (PS) -23317 + (NN) -4576 + (LL) 13916
1D Compatibility (HY) -7600 + (ID) 2800
Total energy: -122403.0 ( -64.59 by residue)
QMean score : 0.450
|
|
|