Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLKHFGSKVRNLRVT------RNITREDFCGDETELSVRQLARIESGQS-IPNLTKAHYIAKQLNVKLDILTGGESLELPKRYKELKYKLLRTPTYGDANRLAVREAYFDEIYEVFYEELPEDERLIIDCMQSKLDVHFSVNDNFGITILHDYFDQIKKKKEYTTNDFVMIDLYLLCFSINYGMKSLYSLENYHFIMSKLLEQDNLLPEDNFQLNNVLLNHVELAFQFKQKKYVQQIIHRSNAIMTEIHDFQKRPILSLIEWKYLLIIEKDRTKAETCFKQSILFAELIGDLYLKGKLIEEWNKDLT |
3PXP Chain:A ((4-76)) | -RAAFGKLVQALRREHRDEKGRVWTQEVLA-ERTQLPKRTIERIENGSLAHLDADILLRLADALELTIGERREFFFAATGIIEQKSATYKRSPEESLQYLIDMIRNMNVPAFVTDQYVNIIAANMITIRFFNIPMELIETAPLLPHGYNLMRVVFGTEYDFRRVVGTMWDEVARHNMQLFRAISLRVRADGYFVELLDNLMQYREFKRFWERAHLETEDTSAENFWYQYTHPVYGLLSYVSSRSQIPTSMGLLSMHTYIPLSPATTDLFAKLSTVANQDVIRLAPWPRSNG---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PXP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4516 for 430 contacts (-10.5/contact) +
2D Compatibility (PS) -7196 + (NN) -2555 + (LL) 1496
1D Compatibility (HY) -1200 + (ID) 850
Total energy: -14821.0 ( -34.47 by residue)
QMean score : 0.418
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