Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVM------ANLDKEDSLSVESRATSTWEHG-NPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQGTYDDKISLFCDGG---------VPDPWY--TGDFEETYRLVNDGCKQWLTLINNSRD
1D1P Chain:B ((9-156))
---VAFICLGNFCRSPMAEAIFKHEVEKANLENRFN-KIDSFGTSNYHVGESPDHR-TVSICKQHGVK-INHKGKQ-IKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFGDWNTNDGTVQTIIEDPWYGDIQDFEYNFKQITYFSKQFLKKEL----
General information:
TITO was launched using:
RESULT:
Template:
1D1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72454 for 1027 contacts (-70.5/contact) +
2D Compatibility (PS) -13890 + (NN) -3605 + (LL) 644
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -103705.0 ( -100.98 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1D1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D1P-query.scw
PDB file :
Tito_Scwrl_1D1P.pdb
: