Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MSHAWKELTFYKKKYLLIELLIIVMMFMVVFLSGLANGLGRAVSAAIENNPAQTYILNEGAEQVIT-----SSVLTTKDQTDLNSLNLKDSTTLNIQRSSLTRQGHEK-KIDIS------YFAIDKDSFMAPTLSEGKQLTSYKKAII---LNDSLKAEGIKLGDKVIDKSSSISLTVV-GFVHNSMYGHGPVAF--IDKDIYTEINKKINPQYQFLPQALVMKNDKSI----SHLPTQLEAVSKKDVIQHI-PGYSAEQSTLNMILWVLVVASAGILGVFFYI--ITLQKRHEFSVMKAIGTKMSEIALFQLSQVIILALFGIIVGDGLA-IALSYVLPAQMPFVINWQNIILVSFVFLVIAMISSALSIVKVAKID-PVEVINGGGE |
| 4Q9T Chain:A ((12-446)) | TKILTETEKYSVTKLSTDLSFLPFEGLVDTALQKALVNDLDHIYIWNYNSIQKDTPICKISLHSSPPICLFTSSINGICIINKKNSQFLYFEDISTINNLAHVLDLKLKDNENITSTINCEPSGIIIATSLGRVLFITIKDSTGKPKLELKQQLIKPQNSFFFRNLDSSKEIISLKKGPIVGKGERLLYITTRGGSLQIWQLSINSKSFKRLEINIYEHVLDSLQDLYPFAHGTLAFLDSHPIYSDTSSAHLTLASISNGNEIYYLMITVILDEKTNSFQIFSIYK-----LNTYFTKSTVDLNHKPQLFIPNALDSIVS-------PTLSVYVLFN----NAVVMTQISSKLDSSFPLRRKWEDIIRFNKDVEIIGSGYSTDSIYVICK-DMGVLKIASH-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q9T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164601 for 2584 contacts (-63.7/contact) +
2D Compatibility (PS) -35657 + (NN) 12471 + (LL) 1912
1D Compatibility (HY) -14400 + (ID) 3000
Total energy: -203275.0 ( -78.67 by residue)
QMean score : 0.080
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