Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYKKYQIIYAPDVLEKLKEIRDYISQNYSSTSGQRKMEQIINDIEKLEVFPEVGFD---ADEKYGSEISNYHSTRGYTLSKDYIVLYHIEEEENRVVIDYLLPTRSDYMKLFK
3BPQ Chain:B ((3-86))
-------VLFAKTFVKDLKHVPGH------------IRKRIKLIIEECQNSNSLN-LKLDIKKIKG-YHNY----YRIRVG-NYSIGIEVNGD--TIIFRRVLHRKSIYDYFP-
General information:
TITO was launched using:
RESULT:
Template:
3BPQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41674 for 516 contacts (-80.8/contact) +
2D Compatibility (PS) -8275 + (NN) -1009 + (LL) 1416
1D Compatibility (HY) -4800 + (ID) 550
Total energy: -54892.0 ( -106.38 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_3BPQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BPQ-query.scw
PDB file :
Tito_Scwrl_3BPQ.pdb
: