Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTLIVNSHPDFSNPYSFTTILQEKFIELYNEHFPNHQLSILNLYDCVLPEITKEVLLSIWSKQRKGLELTA-DEIVQAKIS--KDLLEQFKSHHRIVFVSPMHNYNVTARAKTYIDNIFIAGETFKYTENGSVGLMTDDYRLLMLESAGSIYSKGQYSPYEFPVHYLKAIFKDFMAFDDFCVVRAEGTDILDRQVVLDKMNQDLREAFEAFYSKE
3W78 Chain:C ((5-199))
---LFITANPN-SAEGSFGMAVGEAFIEAYKNEHPQDEVVTIDLFNTTVPAIDADVFAA-WGKFAAGEGFEALTEVQQQKVAAMNTNLETFMNADRYVFVTPMWNFSYPPVVKAYLDNVAIAGKTFKYTENGPVGLL-EGKKALHIQATGGVYSEGAYAAVDFGRNHLKTVL-GFVGVNDTEYIAVEGMNANPEKA------QEIKEAAIANAREL
General information:
TITO was launched using:
RESULT:
Template:
3W78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108106 for 1374 contacts (-78.7/contact) +
2D Compatibility (PS) -20516 + (NN) -10810 + (LL) 1116
1D Compatibility (HY) -12800 + (ID) 3300
Total energy: -154416.0 ( -112.38 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3W78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W78-query.scw
PDB file :
Tito_Scwrl_3W78.pdb
: