Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKESFKLIATAAAGLEAIVGREIRNLG-I--D-CQVENGRVRFHGDIKTIIETNLWLRAADRIKIIVGEFP---ARTFEELFQGVYGLDWENYLPLGAKFPIAKAKCVKSKLHNEPSVQAISKKAVAKKLQKVFHRPEGVPLQENGAEFKIEVSILKDKATVMIDTTGSSLFKRGYRAEKGGAPIKENMAAAIIQLSNWFPDKPLIDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEAWPWVDQSQVQKVRDEAESKANYDIDLDISGFDLDGRMVEIARKNAEEAGLGDVIKLKQMRLQDLKTD-KINGVIISNPPYGERLLDDKAVDI----LYNEMGQTFAPLKTWSKFILTSDEGFEKK---YGSQADKKRKLYNGTLKVDLYQYYGERVRRQVK |
| 3TMA Chain:A ((19-352)) | ---HMWLEATTHPGLEDLLLEELSALYPGEGAEVDARKGRVRIPRAWV--GEEALGLRLAHHLVLFRARLLLSREDPLGALERAALALPWPELEG-AGSFRVEA-RREGEHPFTSPEVERRVGEALHRAY----G--VPVDL--KRPAVRVRVDVRGEEAFLGVQLTERPLSRRFPK-AALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLG-------------------------------------PTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFFPEVDRILANPPHGL----KEGLFHLYWDFLRGALALLP--PGGRVALLTLRPALLKRALPPGFALRHARVVEQGGVYPRVFVLEKL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TMA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88846 for 2553 contacts (-34.8/contact) +
2D Compatibility (PS) -34293 + (NN) -10890 + (LL) 4916
1D Compatibility (HY) -11200 + (ID) 3250
Total energy: -143563.0 ( -56.23 by residue)
QMean score : 0.369
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